Fix indirect includes

Source/Android/jni/MainAndroid.cpp

@@ -23,6 +23,7 @@
 #include "Common/FileUtil.h"
 #include "Common/GL/GLInterfaceBase.h"
 #include "Common/Logging/LogManager.h"
+#include "Common/MsgHandler.h"
 
 #include "Core/BootManager.h"
 #include "Core/ConfigManager.h"

Source/Core/DiscIO/FileSystemGCWii.cpp

@@ -9,6 +9,7 @@
 #include <string>
 #include <vector>
 
+#include "Common/CommonFuncs.h"
 #include "Common/CommonTypes.h"
 #include "Common/FileUtil.h"
 #include "Common/Logging/Log.h"